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    Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants 

    Barkman, Todd J; McNeal, Joel R; Lim, Seok-Hong; Coat, Gwen; Croom, Henrietta B; Young, Nelson D; dePamphilis, Claude W (2007-12-21)
    Abstract Background Some of the most difficult phylogenetic questions in evolutionary biology involve identification of the free-living ...
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    Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids 

    Cai, Zhengqiu; Penaflor, Cynthia; Kuehl, Jennifer V; Leebens-Mack, James; Carlson, John E; dePamphilis, Claude W; Boore, Jeffrey L; Jansen, Robert K (2006-10-04)
    Abstract Background The magnoliids with four orders, 19 families, and 8,500 species represent one of the largest clades of early ...
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    Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae) 

    McNeal, Joel R; Arumugunathan, Kathiravetpilla; Kuehl, Jennifer V; Boore, Jeffrey L; dePamphilis, Claude W (2007-12-13)
    Abstract Background The genus Cuscuta L. (Convolvulaceae), commonly known as dodders, are epiphytic vines that invade the stems of ...
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    Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies 

    Bliss, Barbara J; Wanke, Stefan; Barakat, Abdelali; Ayyampalayam, Saravanaraj; Wickett, Norman; Wall, P Kerr; Jiao, Yuannian; Landherr, Lena; Ralph, Paula E; Hu, Yi; Neinhuis, Christoph; Leebens-Mack, Jim; Arumuganathan, Kathiravetpilla; Clifton, Sandra W; Maximova, Siela N; Ma, Hong; dePamphilis, Claude W (2013-01-24)
    Abstract Background Previous studies in basal angiosperms have provided insight into the diversity within the angiosperm lineage and helped to polarize analyses of flowering plant evolution. ...
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    Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) 

    Ming, Ray; VanBuren, Robert; Liu, Yanling; Yang, Mei; Han, Yuepeng; Li, Lei-Ting; Zhang, Qiong; Kim, Min-Jeong; Schatz, Michael C; Campbell, Michael; Li, Jingping; Bowers, John E; Tang, Haibao; Lyons, Eric; Ferguson, Ann A; Narzisi, Giuseppe; Nelson, David R; Blaby-Haas, Crysten E; Gschwend, Andrea R; Jiao, Yuannian; Der, Joshua P; Zeng, Fanchang; Han, Jennifer; Min, Xiang J; Hudson, Karen A; Singh, Ratnesh; Grennan, Aleel K; Karpowicz, Steven J; Watling, Jennifer R; Ito, Kikukatsu; Robinson, Sharon A; Hudson, Matthew E; Yu, Qingyi; Mockler, Todd C; Carroll, Andrew; Zheng, Yun; Sunkar, Ramanjulu; Jia, Ruizong; Chen, Nancy; Arro, Jie; Wai, Ching M; Wafula, Eric; Spence, Ashley; Han, Yanni; Xu, Liming; Zhang, Jisen; Peery, Rhiannon; Haus, Miranda J; Xiong, Wenwei; Walsh, James A; Wu, Jun; Wang, Ming-Li; Zhu, Yun J; Paull, Robert E; Britt, Anne B; Du, Chunguang; Downie, Stephen R; Schuler, Mary A; Michael, Todd P; Long, Steve P; Ort, Donald R; William Schopf, J; Gang, David R; Jiang, Ning; Yandell, Mark; dePamphilis, Claude W; Merchant, Sabeeha S; Paterson, Andrew H; Buchanan, Bob B; Li, Shaohua; Shen-Miller, Jane (2013-05-10)
    Abstract Background Sacred lotus is a basal eudicot with agricultural, medicinal, cultural and religious importance. It was domesticated in Asia about 7,000 years ago, and cultivated for its rhizomes and seeds as a food ...
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    A genome triplication associated with early diversification of the core eudicots 

    Jiao, Yuannian; Leebens-Mack, Jim; Ayyampalayam, Saravanaraj; Bowers, John E; McKain, Michael R; McNeal, Joel; Rolf, Megan; Ruzicka, Daniel R; Wafula, Eric; Wickett, Norman J; Wu, Xiaolei; Zhang, Yong; Wang, Jun; Zhang, Yeting; Carpenter, Eric J; Deyholos, Michael K; Kutchan, Toni M; Chanderbali, Andre S; Soltis, Pamela S; Stevenson, Dennis W; McCombie, Richard; Pires, J C; Wong, Gane KS; Soltis, Douglas E; dePamphilis, Claude W (2012-01-26)
    Abstract Background Although it is agreed that a major polyploidy event, gamma, occurred within the eudicots, the phylogenetic placement of the event remains unclear. Results To determine when this polyploidization ...
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    Data access for the 1,000 Plants (1KP) project 

    Matasci, Naim; Hung, Ling-Hong; Yan, Zhixiang; Carpenter, Eric J; Wickett, Norman J; Mirarab, Siavash; Nguyen, Nam; Warnow, Tandy; Ayyampalayam, Saravanaraj; Barker, Michael; Burleigh, J G; Gitzendanner, Matthew A; Wafula, Eric; Der, Joshua P; dePamphilis, Claude W; Roure, Béatrice; Philippe, Hervé; Ruhfel, Brad R; Miles, Nicholas W; Graham, Sean W; Mathews, Sarah; Surek, Barbara; Melkonian, Michael; Soltis, Douglas E; Soltis, Pamela S; Rothfels, Carl; Pokorny, Lisa; Shaw, Jonathan A; DeGironimo, Lisa; Stevenson, Dennis W; Villarreal, Juan C; Chen, Tao; Kutchan, Toni M; Rolf, Megan; Baucom, Regina S; Deyholos, Michael K; Samudrala, Ram; Tian, Zhijian; Wu, Xiaolei; Sun, Xiao; Zhang, Yong; Wang, Jun; Leebens-Mack, Jim; Wong, Gane K (2014-10-27)
    Abstract The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages ...
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    Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies 

    Zahn, Laura M; Ma, Xuan; Altman, Naomi S; Zhang, Qing; Wall, P Kerr; Tian, Donglan; Gibas, Cynthia J; Gharaibeh, Raad; Leebens-Mack, James H; dePamphilis, Claude W; Ma, Hong (2010-10-15)
    Abstract Background Molecular genetic studies of floral development have concentrated on several core eudicots and grasses (monocots), which have canalized floral forms. Basal eudicots possess a wider range of floral ...
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    A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure 

    Zuccolo, Andrea; Bowers, John E; Estill, James C; Xiong, Zhiyong; Luo, Meizhong; Sebastian, Aswathy; Goicoechea, José L; Collura, Kristi; Yu, Yeisoo; Jiao, Yuannian; Duarte, Jill; Tang, Haibao; Ayyampalayam, Saravanaraj; Rounsley, Steve; Kudrna, Dave; Paterson, Andrew H; Pires, J C; Chanderbali, Andre; Soltis, Douglas E; Chamala, Srikar; Barbazuk, Brad; Soltis, Pamela S; Albert, Victor A; Ma, Hong; Mandoli, Dina; Banks, Jody; Carlson, John E; Tomkins, Jeffrey; dePamphilis, Claude W; Wing, Rod A; Leebens-Mack, Jim (2011-05-27)
    Abstract Background Recent phylogenetic analyses have identified Amborella trichopoda, an understory tree species endemic to the forests of New Caledonia, as sister to a clade including all other known flowering plant ...
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    Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels 

    Duarte, Jill M; Wall, P Kerr; Edger, Patrick P; Landherr, Lena L; Ma, Hong; Pires, J Chris; Leebens-Mack, Jim; dePamphilis, Claude W (2010-02-24)
    Abstract Background Although the overwhelming majority of genes found in angiosperms are members of gene families, and both gene- and genome-duplication are pervasive forces in plant genomes, some genes are sufficiently ...
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    Leebens-Mack, Jim (6)Ma, Hong (5)Ayyampalayam, Saravanaraj (4)Jiao, Yuannian (4)Soltis, Douglas E (4)Soltis, Pamela S (4)Wall, P Kerr (4)Bowers, John E (3)Carlson, John E (3)... View MoreDate Issued2007 (2)2010 (2)2013 (2)2006 (1)2009 (1)2011 (1)2012 (1)2014 (1)Has File(s)Yes (11)

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