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    Screening synteny blocks in pairwise genome comparisons through integer programming 

    Tang, Haibao; Lyons, Eric; Pedersen, Brent; Schnable, James C; Paterson, Andrew H; Freeling, Michael (2011-04-18)
    Abstract Background It is difficult to accurately interpret chromosomal correspondences such as true orthology and paralogy due to significant divergence of genomes from a common ancestor. Analyses are particularly ...
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    Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) 

    Ming, Ray; VanBuren, Robert; Liu, Yanling; Yang, Mei; Han, Yuepeng; Li, Lei-Ting; Zhang, Qiong; Kim, Min-Jeong; Schatz, Michael C; Campbell, Michael; Li, Jingping; Bowers, John E; Tang, Haibao; Lyons, Eric; Ferguson, Ann A; Narzisi, Giuseppe; Nelson, David R; Blaby-Haas, Crysten E; Gschwend, Andrea R; Jiao, Yuannian; Der, Joshua P; Zeng, Fanchang; Han, Jennifer; Min, Xiang J; Hudson, Karen A; Singh, Ratnesh; Grennan, Aleel K; Karpowicz, Steven J; Watling, Jennifer R; Ito, Kikukatsu; Robinson, Sharon A; Hudson, Matthew E; Yu, Qingyi; Mockler, Todd C; Carroll, Andrew; Zheng, Yun; Sunkar, Ramanjulu; Jia, Ruizong; Chen, Nancy; Arro, Jie; Wai, Ching M; Wafula, Eric; Spence, Ashley; Han, Yanni; Xu, Liming; Zhang, Jisen; Peery, Rhiannon; Haus, Miranda J; Xiong, Wenwei; Walsh, James A; Wu, Jun; Wang, Ming-Li; Zhu, Yun J; Paull, Robert E; Britt, Anne B; Du, Chunguang; Downie, Stephen R; Schuler, Mary A; Michael, Todd P; Long, Steve P; Ort, Donald R; William Schopf, J; Gang, David R; Jiang, Ning; Yandell, Mark; dePamphilis, Claude W; Merchant, Sabeeha S; Paterson, Andrew H; Buchanan, Bob B; Li, Shaohua; Shen-Miller, Jane (2013-05-10)
    Abstract Background Sacred lotus is a basal eudicot with agricultural, medicinal, cultural and religious importance. It was domesticated in Asia about 7,000 years ago, and cultivated for its rhizomes and seeds as a food ...
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    Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses 

    Wang, Xiyin; Gowik, Udo; Tang, Haibao; Bowers, John E; Westhoff, Peter; Paterson, Andrew H (2009-06-23)
    Abstract Background Sorghum is the first C4 plant and the second grass with a full genome sequence available. This makes it possible ...
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    Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea 

    Parkin, Isobel A; Koh, Chushin; Tang, Haibao; Robinson, Stephen J; Kagale, Sateesh; Clarke, Wayne E; Town, Chris D; Nixon, John; Krishnakumar, Vivek; Bidwell, Shelby L; Denoeud, France; Belcram, Harry; Links, Matthew G; Just, Jérémy; Clarke, Carling; Bender, Tricia; Huebert, Terry; Mason, Annaliese S; Pires, J C; Barker, Guy; Moore, Jonathan; Walley, Peter G; Manoli, Sahana; Batley, Jacqueline; Edwards, David; Nelson, Matthew N; Wang, Xiyin; Paterson, Andrew H; King, Graham; Bancroft, Ian; Chalhoub, Boulos; Sharpe, Andrew G (2014-06-10)
    Abstract Background Brassica oleracea is a valuable vegetable species that has contributed to human health and nutrition for hundreds of years and comprises ...
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    A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure 

    Zuccolo, Andrea; Bowers, John E; Estill, James C; Xiong, Zhiyong; Luo, Meizhong; Sebastian, Aswathy; Goicoechea, José L; Collura, Kristi; Yu, Yeisoo; Jiao, Yuannian; Duarte, Jill; Tang, Haibao; Ayyampalayam, Saravanaraj; Rounsley, Steve; Kudrna, Dave; Paterson, Andrew H; Pires, J C; Chanderbali, Andre; Soltis, Douglas E; Chamala, Srikar; Barbazuk, Brad; Soltis, Pamela S; Albert, Victor A; Ma, Hong; Mandoli, Dina; Banks, Jody; Carlson, John E; Tomkins, Jeffrey; dePamphilis, Claude W; Wing, Rod A; Leebens-Mack, Jim (2011-05-27)
    Abstract Background Recent phylogenetic analyses have identified Amborella trichopoda, an understory tree species endemic to the forests of New Caledonia, as sister to a clade including all other known flowering plant ...
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    Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes 

    Wang, Jianping; Roe, Bruce; Macmil, Simone; Yu, Qingyi; Murray, Jan E; Tang, Haibao; Chen, Cuixia; Najar, Fares; Wiley, Graham; Bowers, John; Van Sluys, Marie-Anne; Rokhsar, Daniel S; Hudson, Matthew E; Moose, Stephen P; Paterson, Andrew H; Ming, Ray (2010-04-23)
    Abstract Background Sugarcane (Saccharum spp.) has become an increasingly important crop for its leading role in biofuel production. The high sugar content species S. officinarum is an octoploid without known diploid ...
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    A draft physical map of a D-genome cotton species (Gossypium raimondii) 

    Lin, Lifeng; Pierce, Gary J; Bowers, John E; Estill, James C; Compton, Rosana O; Rainville, Lisa K; Kim, Changsoo; Lemke, Cornelia; Rong, Junkang; Tang, Haibao; Wang, Xiyin; Braidotti, Michele; Chen, Amy H; Chicola, Kristen; Collura, Kristi; Epps, Ethan; Golser, Wolfgang; Grover, Corrinne; Ingles, Jennifer; Karunakaran, Santhosh; Kudrna, Dave; Olive, Jaime; Tabassum, Nabila; Um, Eareana; Wissotski, Marina; Yu, Yeisoo; Zuccolo, Andrea; ur Rahman, Mehboob; Peterson, Daniel G; Wing, Rod A; Wendel, Jonathan F; Paterson, Andrew H (2010-06-22)
    Abstract Background Genetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing. Cultivated tetraploid cottons, Gossypium ...
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    Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea 

    Parkin, Isobel AP; Koh, Chushin; Tang, Haibao; Robinson, Stephen J; Kagale, Sateesh; Clarke, Wayne E; Town, Chris D; Nixon, John; Krishnakumar, Vivek; Bidwell, Shelby L; Denoeud, France; Belcram, Harry; Links, Matthew G; Just, Jérémy; Clarke, Carling; Bender, Tricia; Huebert, Terry; Mason, Annaliese S; Pires, J C; Barker, Guy; Moore, Jonathan; Walley, Peter G; Manoli, Sahana; Batley, Jacqueline; Edwards, David; Nelson, Matthew N; Wang, Xiyin; Paterson, Andrew H; King, Graham; Bancroft, Ian; Chalhoub, Boulos; Sharpe, Andrew G (2014-06-10)
    Abstract Background Brassica oleracea is a valuable vegetable species that has contributed to human health and nutrition for hundreds of years and comprises multiple distinct cultivar ...

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    Paterson, Andrew H (8)
    Tang, Haibao (8)
    Bowers, John E (4)Wang, Xiyin (4)Pires, J C (3)Bancroft, Ian (2)Barker, Guy (2)Batley, Jacqueline (2)Belcram, Harry (2)Bender, Tricia (2)... View MoreDate Issued2010 (2)2011 (2)2014 (2)2009 (1)2013 (1)Has File(s)Yes (8)

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