Now showing items 1-5 of 5

    • A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure 

      Zuccolo, Andrea; Bowers, John E; Estill, James C; Xiong, Zhiyong; Luo, Meizhong; Sebastian, Aswathy; Goicoechea, José L; Collura, Kristi; Yu, Yeisoo; Jiao, Yuannian; Duarte, Jill; Tang, Haibao; Ayyampalayam, Saravanaraj; Rounsley, Steve; Kudrna, Dave; Paterson, Andrew H; Pires, J C; Chanderbali, Andre; Soltis, Douglas E; Chamala, Srikar; Barbazuk, Brad; Soltis, Pamela S; Albert, Victor A; Ma, Hong; Mandoli, Dina; Banks, Jody; Carlson, John E; Tomkins, Jeffrey; dePamphilis, Claude W; Wing, Rod A; Leebens-Mack, Jim (2011-05-27)
      Abstract Background Recent phylogenetic analyses have identified Amborella trichopoda, an understory tree species endemic to the forests of New Caledonia, as sister to a clade including all other known flowering plant ...
    • Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies 

      Bliss, Barbara J; Wanke, Stefan; Barakat, Abdelali; Ayyampalayam, Saravanaraj; Wickett, Norman; Wall, P Kerr; Jiao, Yuannian; Landherr, Lena; Ralph, Paula E; Hu, Yi; Neinhuis, Christoph; Leebens-Mack, Jim; Arumuganathan, Kathiravetpilla; Clifton, Sandra W; Maximova, Siela N; Ma, Hong; dePamphilis, Claude W (2013-01-24)
      Abstract Background Previous studies in basal angiosperms have provided insight into the diversity within the angiosperm lineage and helped to polarize analyses of flowering plant evolution. ...
    • Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies 

      Zahn, Laura M; Ma, Xuan; Altman, Naomi S; Zhang, Qing; Wall, P Kerr; Tian, Donglan; Gibas, Cynthia J; Gharaibeh, Raad; Leebens-Mack, James H; dePamphilis, Claude W; Ma, Hong (2010-10-15)
      Abstract Background Molecular genetic studies of floral development have concentrated on several core eudicots and grasses (monocots), which have canalized floral forms. Basal eudicots possess a wider range of floral ...
    • Comparison of next generation sequencing technologies for transcriptome characterization 

      Wall, P Kerr; Leebens-Mack, Jim; Chanderbali, André S; Barakat, Abdelali; Wolcott, Erik; Liang, Haiying; Landherr, Lena; Tomsho, Lynn P; Hu, Yi; Carlson, John E; Ma, Hong; Schuster, Stephan C; Soltis, Douglas E; Soltis, Pamela S; Altman, Naomi; dePamphilis, Claude W (2009-08-01)
      Abstract Background We have developed a simulation approach to help determine the optimal mixture of sequencing methods for most ...
    • Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels 

      Duarte, Jill M; Wall, P Kerr; Edger, Patrick P; Landherr, Lena L; Ma, Hong; Pires, J Chris; Leebens-Mack, Jim; dePamphilis, Claude W (2010-02-24)
      Abstract Background Although the overwhelming majority of genes found in angiosperms are members of gene families, and both gene- and genome-duplication are pervasive forces in plant genomes, some genes are sufficiently ...